http://www.gramene.org/diversity/tassel_launch.html

LAUNCH TASSEL with SNP data setsClicking on a link below will launch TASSEL 3.0-beta with one or all chromosomes. Your computer must have Java 6 installed.

• Maize
• Maize Diversity Hapmap1, AGPv2 coordinates, 1.6 million SNP x 27 NAM lines.[ chr: unmapped 1 2 3 4 5 6 7 8 9 10 11 12 ]
• Arabidopsis
• NSF 2010 Project, Magnus Nordborg, http://walnut.usc.edu NSF Arabidopsis 2010 Project 250K chip, v3.06; 1307 ecotypes x 214,052 SNPs; TAIR10.[ chr: 1 2 3 4 5 ]
• Richard Mott; WTCHG(Wellcome Trust Centre for Human Genetics) 1001 Genomes WTCHG/Mott set from dbSNP; 17 ecotypes x 2698797 SNPs; TAIR10.[ chr: 1 2 3 4 5 ]
• Atwell S, et. al. Atwell et. al, Nature 2010, GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines; TAIR10.[ chr: 1 2 3 4 5 ALL ]
• D. Weigel NSF Arabidopsis 2010 Project SNP Discovery; 20 ecotypes, 637522 SNPs; Clark et. al. 2007; TAIR10.[ chr: 1 2 3 4 5 ]
• M. Nordborg NSF Arabidopsis 2010 Project 250K chip, v3.04; 1179 ecotypes x 214,545 SNPs; TAIR10.[ chr: 1 2 3 4 5 ]
• Rice
• Yulin Jia, USDA-ARS DBNRRC B-Gross/J-Yulin SNP Pi-ta study in AA Oryza; 143 accessions x 632 SNP.[ chr: 12 ]
• Rice HaplotypeMap Project, National Center for Gene Research, CAS; www.ncgr.ac.cn/RiceHapMap Huang X, et al, Nat Genetics 2010 Nov. 842,474 SNPs* x 374 landraces, 14 phenotypes. *IRGSP4 coordinates..[ chr: 1 2 3 4 5 6 7 8 9 10 11 12 ]

Genome-wide association studies of 14 agronomic traits in rice landraces

• Zhao K et. al.; ricediversity.org '1536 chip' - 1311 SNPs x 395 rice accessions (Zhao et. al, PLoS, 2010; ricediversity.org).[ chr: 1 2 3 4 5 6 7 8 9 10 11 12 ]

Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome

• McNally et. al.; oryzaSNP.org ~160K SNPs x 20 accessions (McNally 2009 PNAS/Oryzasnp Project).[ chr: 1 2 3 4 5 6 7 8 9 10 11 12 ]

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

• Susan McCouch RiceDiversity 44K SNP assay, 34 trait GWAS study, Nat Comm Sept 2011 .[ chr: 1 2 3 4 5 6 7 8 9 10 11 12 ]

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa(这篇文章里说,种子可以获得,但其提供的网站,打不开.不知是不是我这里暂时打不开)

本想把参考文献传上来,有点大比较费时间