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大规模多组学分析破译结直肠癌的遗传基因
2022-12-21 20:45

美国华盛顿大学Ulrike Peters等研究人员合作通过对100204例欧洲和东亚血统的病例和154587例对照的多组学分析,破译结直肠癌的遗传基因。相关论文于2022年12月20日在线发表在《自然—遗传学》杂志上。

研究人员对100204个结直肠癌(CRC)病例和154587个欧洲和东亚血统的对照组进行了全基因组关联研究荟萃分析,确定了205个独立的风险关联,其中50个是未报告的。研究人员对大肠粘膜和其他组织进行了综合的基因组、转录组和甲基组分析。转录组和甲基组的关联研究显示了另外53个风险关联。研究人员确定了155个与CRC风险有功能联系的高置信度效应基因,其中许多基因以前没有确定在CRC中的作用。这些基因有多种不同的功能,特别表明正常的结直肠平衡、增殖、细胞粘附、迁移、免疫和微生物相互作用方面的变异决定了CRC风险。
 
相互组织分析表明,超过三分之一的效应基因最可能在结肠粘膜之外发挥作用。这些研究结果提供了对结直肠肿瘤发生的见解,并强调了新的CRC治疗和化学预防策略的跨组织潜在靶标。
 
据悉,CRC是世界范围内的一个主要死亡原因。
 
附:英文原文

Title: Deciphering colorectal cancer genetics through multi-omic analysis of 100,204 cases and 154,587 controls of European and east Asian ancestries

Author: Fernandez-Rozadilla, Ceres, Timofeeva, Maria, Chen, Zhishan, Law, Philip, Thomas, Minta, Schmit, Stephanie, Dez-Obrero, Virginia, Hsu, Li, Fernandez-Tajes, Juan, Palles, Claire, Sherwood, Kitty, Briggs, Sarah, Svinti, Victoria, Donnelly, Kevin, Farrington, Susan, Blackmur, James, Vaughan-Shaw, Peter, Shu, Xiao-ou, Long, Jirong, Cai, Qiuyin, Guo, Xingyi, Lu, Yingchang, Broderick, Peter, Studd, James, Huyghe, Jeroen, Harrison, Tabitha, Conti, David, Dampier, Christopher, Devall, Mathew, Schumacher, Fredrick, Melas, Marilena, Rennert, Gad, Obn-Santacana, Mireia, Martn-Snchez, Vicente, Moratalla-Navarro, Ferran, Oh, Jae Hwan, Kim, Jeongseon, Jee, Sun Ha, Jung, Keum Ji, Kweon, Sun-Seog, Shin, Min-Ho, Shin, Aesun, Ahn, Yoon-Ok, Kim, Dong-Hyun, Oze, Isao, Wen, Wanqing, Matsuo, Keitaro, Matsuda, Koichi, Tanikawa, Chizu, Ren, Zefang, Gao, Yu-Tang, Jia, Wei-Hua, Hopper, John, Jenkins, Mark, Win, Aung Ko, Pai, Rish, Figueiredo, Jane, Haile, Robert, Gallinger, Steven, Woods, Michael, Newcomb, Polly, Duggan, David, Cheadle, Jeremy, Kaplan, Richard

Issue&Volume: 2022-12-20

Abstract: Colorectal cancer (CRC) is a leading cause of mortality worldwide. We conducted a genome-wide association study meta-analysis of 100,204 CRC cases and 154,587 controls of European and east Asian ancestry, identifying 205 independent risk associations, of which 50 were unreported. We performed integrative genomic, transcriptomic and methylomic analyses across large bowel mucosa and other tissues. Transcriptome- and methylome-wide association studies revealed an additional 53 risk associations. We identified 155 high-confidence effector genes functionally linked to CRC risk, many of which had no previously established role in CRC. These have multiple different functions and specifically indicate that variation in normal colorectal homeostasis, proliferation, cell adhesion, migration, immunity and microbial interactions determines CRC risk. Crosstissue analyses indicated that over a third of effector genes most probably act outside the colonic mucosa. Our findings provide insights into colorectal oncogenesis and highlight potential targets across tissues for new CRC treatment and chemoprevention strategies.

DOI: 10.1038/s41588-022-01222-9

Source: https://www.nature.com/articles/s41588-022-01222-9

Nature Genetics:《自然—遗传学》,创刊于1992年。隶属于施普林格·自然出版集团,最新IF:41.307
官方网址:https://www.nature.com/ng/
投稿链接:https://mts-ng.nature.com/cgi-bin/main.plex


本期文章:《自然—遗传学》:Online/在线发表

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