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COMPASS、Polycomb以及DNA甲基化差异性调节H3K4三甲基化
2020-05-12 14:20

美国西北大学Feinberg医学院Ali Shilatifard课题组揭示,COMPASS、Polycomb以及DNA甲基化之间的平衡如何调节发育基因表达过程中的组蛋白H3K4三甲基化。这一研究成果于2020年5月11日在线发表在《自然—遗传学》上。

为了解MLL2依赖的转录调控,研究人员进行了基于CRISPR的筛选,将MLL2依赖的基因作为小鼠胚胎干细胞中的报告基因。研究人员发现MLL2通过排斥PRC2和DNA甲基化机制来保护发育基因免受阻抑,从而在基因表达中起作用。因此,通过抑制PRC2和DNA甲基转移酶可以减轻在没有MLL2情况下的抑制。
 
此外,在这样基因座上的DNA去甲基化不仅通过去除DNA甲基化,而且通过开放先前的CpG甲基化区域进行PRC2募集,从而在多梳抑制基因上稀释PRC2,进而导致MLL2依赖性基因的重新激活。
 
这些发现揭示了这三个染色质表观遗传修饰因子的背景和功能如何协调转录,并表明通过酶而不是H3K4三甲基化来防止主动抑制是MLL2/COMPASS靶基因转录调控的基础。
 
据介绍,COMPASS蛋白家族可催化组蛋白H3第4为赖氨酸(H3K4)甲基化,其成员对于调节基因表达至关重要。MLL2/COMPASS使许多发育基因和二价基因簇上的H3K4甲基化。
 
附:英文原文

Title: Uncoupling histone H3K4 trimethylation from developmental gene expression via an equilibrium of COMPASS, Polycomb and DNA methylation

Author: Delphine Douillet, Christie C. Sze, Caila Ryan, Andrea Piunti, Avani P. Shah, Michal Ugarenko, Stacy A. Marshall, Emily J. Rendleman, Didi Zha, Kathryn A. Helmin, Zibo Zhao, Kaixiang Cao, Marc A. Morgan, Benjamin D. Singer, Elizabeth T. Bartom, Edwin R. Smith, Ali Shilatifard

Issue&Volume: 2020-05-11

Abstract: The COMPASS protein family catalyzes histone H3 Lys 4 (H3K4) methylation and its members are essential for regulating gene expression. MLL2/COMPASS methylates H3K4 on many developmental genes and bivalent clusters. To understand MLL2-dependent transcriptional regulation, we performed a CRISPR-based screen with an MLL2-dependent gene as a reporter in mouse embryonic stem cells. We found that MLL2 functions in gene expression by protecting developmental genes from repression via repelling PRC2 and DNA methylation machineries. Accordingly, repression in the absence of MLL2 is relieved by inhibition of PRC2 and DNA methyltransferases. Furthermore, DNA demethylation on such loci leads to reactivation of MLL2-dependent genes not only by removing DNA methylation but also by opening up previously CpG methylated regions for PRC2 recruitment, diluting PRC2 at Polycomb-repressed genes. These findings reveal how the context and function of these three epigenetic modifiers of chromatin can orchestrate transcriptional decisions and demonstrate that prevention of active repression by the context of the enzyme and not H3K4 trimethylation underlies transcriptional regulation on MLL2/COMPASS targets.

DOI: 10.1038/s41588-020-0618-1

Source: https://www.nature.com/articles/s41588-020-0618-1

Nature Genetics:《自然—遗传学》,创刊于1992年。隶属于施普林格·自然出版集团,最新IF:41.307
官方网址:https://www.nature.com/ng/
投稿链接:https://mts-ng.nature.com/cgi-bin/main.plex


本期文章:《自然—遗传学》:Online/在线发表

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