关联作图在植物中的应用是我比较关注的.这也是以前博客的一个主要内容,那个博客中有非常丰富的关联作图的资料.(这篇博文的内容可能会随着我关注的内容而不断更新)

       综述类:

1      Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design.这是2009年plant cell上的综述.这篇文章有个重要观点"We emphasize here that linkage and association mapping are complementary approaches and are more similar than is often assumed".对关联作图质疑的应该好好看看这篇文章,并发专文论述.当然也至少得发到plant cell上,才有足够的权威.Association Mapping

2   STRUCTURE OF LINKAGE DISEQUILIBRIUM IN PLANTS，这是我开始接触关联作图时读的文献，一开始这就是部天书 STRUCTURE OF LINKAGE DISEQUILIBRIUM

3 Linkage disequilibrium and association studies in higher plants:Present status and future prospects这是曾今对关联作图及植物LD相关研究总结比较全面的一篇综述。当然近几年发展比较快Linkage disequilibrium and association in plant

4 Methods for linkage disequilibrium mapping in cropsMethods for linkage disequilibrium

5 Status and Prospects of Association Mapping in PlantsStatus and Prospects of Association Mapping in Pla

       方法类:

1     Analysis of Population Structure: A Unifying Framework and Novel Methods Based on Sparse Factor Analysis.(这种方法叫sparse factor analysis (SFA).)群体结构分析是关联作图中一个重要步骤.常用的群体结构方法有:admixture-based models 和 principal components analysis (PCA),SFA可以将后面两种方法纳入到一个体系中.当然这篇文章太难读了,有许多数学推导.还好有软件http://stephenslab.uchicago.edu/software.html

2  Principal components analysis corrects for stratification in genome-wide association studiesPrincipal components analysis

3 A unified mixed-model method for association mapping that accounts for multiple levels of relatednessA unified mixed-model method

4 An Arabidopsis Example of Association Mapping in Structured SamplesAn Arabidopsis Example of Association Mapping

5 Efficient Control of Population Structure in Model Organism Association Mapping EMMA方法 EMMA

6 A tutorial on statistical methods for population association studiesA tutorial on statistical methods for population a

7 Computer programs for population genetics data analysis: a survival guideComputer programs for population genetics data ana

8 EMMAX

Variance component model to account for sample structure in genome-wide association studies

Kang_VC_tech_report_NG2010.pdf

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     不同植物的关联作图

 拟南芥 107个表型的关联分析Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred linesGenome-wide association study of 107 phenotypes

水稻１４个性状的关联分析：Genome-wide association studies of 14 agronomic traits　in rice landraces

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