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研究揭示DNA引物合成起始的分子基础
2022-05-08 22:20

英国苏塞克斯大学Aidan J. Doherty小组揭示DNA引物合成起始的分子基础。2022年5月4日,《自然》杂志在线发表了这项成果。

研究人员确定了CRISPR相关引物酶聚合酶(CAPP)启动引物合成的分子基础,并表明这一机制在复制性引物酶中也是保守的。引物启动复合物的晶体结构揭示了在合成第一个磷酸二酯键之前,进入的核苷酸如何在活性位点内定位,与金属辅助因子相邻并与模板单链DNA链配对。此外,带有双链DNA的引物酶聚合酶(Prim-Pol)复合物的结构显示了该酶随后是如何以渐进式聚合酶的模式延长引物的。这些结构和机理研究确定了Prim-Pol蛋白是如何诱导引物合成的,揭示了催化域内引物合成的必要分子决定因素。这项工作还确定了Prim-Pol酶的催化结构域,包括复制引物酶,从而足以催化引物的形成。
 
据介绍,在DNA复制的起始阶段,寡核苷酸引物由引物酶从头合成,随后由复制性聚合酶延伸,完成基因组复制。Prim-Pol超家族是一个多样化的引物酶组,其中包括参与适应性免疫的复制性引物酶和CAPP。尽管对这些酶的活动有很多了解,但引物酶用于启动引物合成的精确机制还没有被阐明。
 
附:英文原文
 
Title: Molecular basis for the initiation of DNA primer synthesis

Author: Li, Arthur W. H., Zabrady, Katerina, Bainbridge, Lewis J., Zabrady, Matej, Naseem-Khan, Sehr, Berger, Madison B., Kolesar, Peter, Cisneros, G. Andrs, Doherty, Aidan J.

Issue&Volume: 2022-05-04

Abstract: During the initiation of DNA replication, oligonucleotide primers are synthesized de novo by primases and are subsequently extended by replicative polymerases to complete genome duplication. The primase-polymerase (Prim-Pol) superfamily is a diverse grouping of primases, which includes replicative primases and CRISPR-associated primase-polymerases (CAPPs) involved in adaptive immunity1,2,3. Although much is known about the activities of these enzymes, the precise mechanism used by primases to initiate primer synthesis has not been elucidated. Here we identify the molecular bases for the initiation of primer synthesis by CAPP and show that this mechanism is also conserved in replicative primases. The crystal structure of a primer initiation complex reveals how the incoming nucleotides are positioned within the active site, adjacent to metal cofactors and paired to the templating single-stranded DNA strand, before synthesis of the first phosphodiester bond. Furthermore, the structure of a Prim-Pol complex with double-stranded DNA shows how the enzyme subsequently extends primers in a processive polymerase mode. The structural and mechanistic studies presented here establish how Prim-Pol proteins instigate primer synthesis, revealing the requisite molecular determinants for primer synthesis within the catalytic domain. This work also establishes that the catalytic domain of Prim-Pol enzymes, including replicative primases, is sufficient to catalyse primer formation.

DOI: 10.1038/s41586-022-04695-0

Source: https://www.nature.com/articles/s41586-022-04695-0

Nature:《自然》,创刊于1869年。隶属于施普林格·自然出版集团,最新IF:69.504
官方网址:http://www.nature.com/
投稿链接:http://www.nature.com/authors/submit_manuscript.html


本期文章:《自然》:Online/在线发表

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