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科学家发现细菌中一种依赖于Ni2+的胍水解酶
2022-03-13 16:39

德国康斯坦茨大学J. S. Hartig团队发现了细菌中一种依赖于Ni2+的胍水解酶。相关论文于2022年3月9日在线发表在《自然》杂志上。

研究人员描述了来自Synechocystis sp. PCC 6803的精氨酸酶家族蛋白GdmH(Sll1077),它是一种依赖Ni2+的胍水解酶。GdmH对自由胍具有高度特异性。它的活性取决于两个附属蛋白,它们将Ni2+而不是典型的Mn2+离子装入活性部位。GdmH的晶体结构显示了二核金属簇在典型的精氨酸酶家族酶的几何结构中的配位,并允许建立结合底物的模型。一个独特的氨基末端延伸和一个色氨酸残基缩小了底物结合口袋,并确定在更多的蓝藻、其他一些细菌类群和异源藻类中的同源蛋白可能是胍类水解酶。这种广泛的分布表明胍类水解在水生环境中具有明显的生态相关性。
 
据悉,氮的可用性是许多栖息地中限制生长的因素,全球氮循环涉及原核生物和真核生物对这一宝贵资源的竞争。只有一些细菌和古细菌可以固定元素氮;所有其他生物都依赖于矿物氮或有机氮的同化。富含氮的化合物胍在自然界中广泛存在,但其利用受到明显的共振稳定作用的阻碍,而且催化水解游离胍的酶还没有被确定。
 
附:英文原文
 
Title: Discovery of a Ni2+-dependent guanidine hydrolase in bacteria

Author: Funck, D., Sinn, M., Fleming, J. R., Stanoppi, M., Dietrich, J., Lpez-Igual, R., Mayans, O., Hartig, J. S.

Issue&Volume: 2022-03-09

Abstract: Nitrogen availability is a growth-limiting factor in many habitats1, and the global nitrogen cycle involves prokaryotes and eukaryotes competing for this precious resource. Only some bacteria and archaea can fix elementary nitrogen; all other organisms depend on the assimilation of mineral or organic nitrogen. The nitrogen-rich compound guanidine occurs widely in nature2,3,4, but its utilization is impeded by pronounced resonance stabilization5, and enzymes catalysing hydrolysis of free guanidine have not been identified. Here we describe the arginase family protein GdmH (Sll1077) from Synechocystis sp. PCC 6803 as a Ni2+-dependent guanidine hydrolase. GdmH is highly specific for free guanidine. Its activity depends on two accessory proteins that load Ni2+ instead of the typical Mn2+ ions into the active site. Crystal structures of GdmH show coordination of the dinuclear metal cluster in a geometry typical for arginase family enzymes and allow modelling of the bound substrate. A unique amino-terminal extension and a tryptophan residue narrow the substrate-binding pocket and identify homologous proteins in further cyanobacteria, several other bacterial taxa and heterokont algae as probable guanidine hydrolases. This broad distribution suggests notable ecological relevance of guanidine hydrolysis in aquatic habitats.

DOI: 10.1038/s41586-022-04490-x

Source: https://www.nature.com/articles/s41586-022-04490-x

Nature:《自然》,创刊于1869年。隶属于施普林格·自然出版集团,最新IF:69.504
官方网址:http://www.nature.com/
投稿链接:http://www.nature.com/authors/submit_manuscript.html


本期文章:《自然》:Online/在线发表

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