tobey2009的个人博客分享 http://blog.sciencenet.cn/u/tobey2009

博文

用广义线性模型识别和mRNA可变剪切相关的数量遗传性状

已有 4587 次阅读 2013-8-22 12:36 |系统分类:论文交流| 生物信息学

我们组最近发表在Genome Biology上的一个工作, 标题和摘要如下:

GLiMMPS: Robust statistical model for regulatory variation of alternative splicing using RNA-Seq data

To characterize the genetic variation of alternative splicing, we develop GLiMMPS, a robust statistical method for detecting splicing quantitative trait loci (sQTLs) from RNA-seq data. GLiMMPS takes into account the individual variation in sequencing coverage and the noise prevalent in RNA-seq data. Analyses of simulated and real RNA-seq data sets demonstrate that GLiMMPS outperforms competing statistical models. Quantitative RT-PCR tests of 26 randomly selected GLiMMPS sQTLs yielded a validation rate of 100%. As population-scale RNA-seq studies become increasingly affordable and popular, GLiMMPS provides a useful tool for elucidating the genetic variation of alternative splicing in humans and model organisms.


全文在:http://genomebiology.com/2013/14/7/R74/abstract





https://wap.sciencenet.cn/blog-969747-718863.html

上一篇:今天下午的一个seminar
下一篇:张益唐拿了麦克阿瑟天才奖!
收藏 IP: 76.89.178.*| 热度|

2 薛宇 rosejump

该博文允许注册用户评论 请点击登录 评论 (1 个评论)

数据加载中...

Archiver|手机版|科学网 ( 京ICP备07017567号-12 )

GMT+8, 2024-4-26 20:09

Powered by ScienceNet.cn

Copyright © 2007- 中国科学报社

返回顶部