R packages for GO similarity analysis of microRNAs

马闯 2012-11-22 02:27

Functional similarity of gene products can be estimated by controlled biological vocabularies, such as Gene Ontology (GO). Four methods have been presented to determine the semantic similarity of two GO terms based on the annotation statistics of their common ancestor terms (Resnik (Phil ...

个人分类: R|4167 次阅读|没有评论

GeneSelector: Stability and aggregation of ranked gene lists

马闯 2012-11-3 02:44

GeneSelector is a R package providing over 10 statistical methods (e.g., Fold Change, Limma, SAM, etc) for identifying differentially expressed genes. More details can be found from: http://www.bioconductor.org/packages/release/bioc/manuals/GeneSelector/man/GeneSelector.pdf Reference ...

个人分类: Tools|3280 次阅读|没有评论

Connect Cytoscape with R

马闯 2012-9-5 02:04

1) install R packages (RCurl, XML, XMLRPC) Error " Cannot find curl-config" might be appeared, as Curl is a little tricky for its two dev packages for TLS and OpenSSL . To solve this problem, determine which package do you need in your Ubuntu with command: apt-cache sear ...

个人分类: R|3354 次阅读|没有评论

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