# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz There are perhaps two ways of approaching the effects of Pleistocene ice ages on the genetics of speciation, and like deduction and induction they are complementary. Fi ...
# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz Diversification Analysis: Lineage through time plots can be done in ape ; nLTT can estimate the normalized lineage throug ...
# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz Time series/Paleontology: Paleontological time series data can be analyzed using a likelihood-based framework for fitting and comparing models (using ...
# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz Divergence Times: Non-parametric rate smoothing (NPRS) and penalized likelihood can be implemented in ape . geiger can do congruif ...
# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz Statistical parsimony The statistical parsimony algorithm begins by estimating the maximum number of differences among haplotypes as a result of single substitutions ( ...
# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz Median-joining networks The median-joining network method begins by combining the MINIMUM-SPANNING TREES (MSTs) within a single network. With a parsimony criterion, me ...
# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz Median networks In the median-network approach, sequences are first converted to binary data and constant sites are eliminated. Each split is encoded as a binary chara ...
# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz Split decomposition Any data set can be partitioned into sets (not necessarily of equal size) of sequences or ‘splits’. A network can be built by taking in turn thos ...
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