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TCGA 数据库

已有 14282 次阅读 2017-8-24 12:06 |个人分类:Genome|系统分类:科研笔记

TCGA barcode

一个很好的介绍 TCGA页面

http://www.bio-info-trainee.com/category/cancer



癌症和肿瘤基因图谱 (The Cancer Genome Atlas, TCGA)

参考: https://wiki.nci.nih.gov/display/TCGA/TCGA+barcode

参考 https://wenku.baidu.com/view/2afdd241ad51f01dc381f131.html  #讲解如何从网页下载等

参考: http://www.360doc.com/content/17/0428/22/19913717_649460973.shtml      #提供一个下载小软件

参考: https://zhuanlan.zhihu.com/p/26618099



figure showing an example TCGA barcode; see text



Sample    01-10 是癌组织; 11-19 是正常组织。


Project:  项目名称

TSS:  Tissue source site  组织来源

Participant: Study participant

Sample:  Sample type

Vial:  Order of sample in a sequence of samples

Portion: Order of portion in asequence of 100-120 mg sample portions

Analyte: Molecular type of analyte for analysis

Plate : Order of plate in a sequence of 96-well plates

Center: Sequencing or characterization center that will receive the aliquot for analysis


各类癌症:

肾上腺皮质Adrenocortical carcinomaACC92BrowseBrowse
膀胱,尿路上皮Bladder urothelial carcinomaBLCA412BrowseBrowse
乳腺癌Breast invasive carcinomaBRCA1098BrowseBrowse
子宫颈Cervical and endocervical cancersCESC307BrowseBrowse
胆管癌CholangiocarcinomaCHOL36BrowseBrowse
结肠腺癌Colon adenocarcinomaCOAD460BrowseBrowse
大肠腺癌Colorectal adenocarcinomaCOADREAD631BrowseBrowse
淋巴肿瘤弥漫性大B细胞淋巴瘤Lymphoid Neoplasm Diffuse Large B-cell LymphomaDLBC58BrowseBrowse
食管Esophageal carcinomaESCA185BrowseBrowse
FFPE试点二期FFPE Pilot Phase IIFPPP38NoneBrowse
胶质母细胞瘤Glioblastoma multiformeGBM613BrowseBrowse
脑胶质瘤GliomaGBMLGG1129BrowseBrowse
头颈部鳞状细胞癌Head and Neck squamous cell carcinomaHNSC528BrowseBrowse
肾嫌色Kidney ChromophobeKICH113BrowseBrowse
泛肾Pan-kidney cohort (KICH+KIRC+KIRP)KIPAN973BrowseBrowse
肾透明细胞癌Kidney renal clear cell carcinomaKIRC537BrowseBrowse
肾乳头细胞癌Kidney renal papillary cell carcinomaKIRP323BrowseBrowse
急性髓系白血病Acute Myeloid LeukemiaLAML200BrowseBrowse
脑低级神经胶质瘤Brain Lower Grade GliomaLGG516BrowseBrowse
肝癌Liver hepatocellular carcinomaLIHC377BrowseBrowse
肺腺癌Lung adenocarcinomaLUAD585BrowseBrowse
肺鳞状细胞癌Lung squamous cell carcinomaLUSC504BrowseBrowse
间皮瘤MesotheliomaMESO87BrowseBrowse
卵巢浆液性囊腺癌Ovarian serous cystadenocarcinomaOV602BrowseBrowse
胰腺癌Pancreatic adenocarcinomaPAAD185BrowseBrowse
嗜铬细胞瘤和副神经节瘤Pheochromocytoma and ParagangliomaPCPG179BrowseBrowse
前列腺癌Prostate adenocarcinomaPRAD499BrowseBrowse
直肠腺癌Rectum adenocarcinomaREAD171BrowseBrowse
肉瘤SarcomaSARC260BrowseBrowse
皮肤皮肤黑色素瘤Skin Cutaneous MelanomaSKCM470BrowseBrowse
胃腺癌Stomach adenocarcinomaSTAD443BrowseBrowse
胃和食管癌Stomach and Esophageal carcinomaSTES628BrowseBrowse
睾丸生殖细胞肿瘤Testicular Germ Cell TumorsTGCT150BrowseBrowse
甲状腺癌Thyroid carcinomaTHCA503BrowseBrowse
胸腺瘤ThymomaTHYM124BrowseBrowse
子宫内膜癌Uterine Corpus Endometrial CarcinomaUCEC560BrowseBrowse
子宫癌肉瘤Uterine CarcinosarcomaUCS57BrowseBrowse
葡萄膜黑色素瘤Uveal MelanomaUVM80BrowseBrowse




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