http://www.nejm.org/doi/full/10.1056/NEJMoa1009742

http://arrowsmith.psych.uic.edu/cgi-bin/arrowsmith_uic/edit_b.cgi

Start A-Literature C-Literature B-list Filter Literature

A-query: PLA2R1 OR HLA-DQA1 C-query: idiopathic membranous nephropathy The B-list contains title words and phrases (terms) that appeared in both the A and the C literature. 5 articles appeared in both literatures and were not included in the process of computing the B-list but can be viewed here. The results of this search are saved under id # 7647 and can be accessed from the start page after you leave this session. There are 181 terms on the current B-list (70 are predicted to be relevant), which is shown ranked according to predicted relevance. The list can be further trimmed down using the filters listed in the left margin. To assess whether there appears to be a biologically significant relationship between the AB and BC literatures for specific B-terms, please select one or more B-terms and then click the button to view the corresponding AB and BC literatures. Use Ctrl to select multiple B-terms.

job id # 7647 started Sat Feb 19 03:06:22 2011
Max_citations: 50000
Stoplist: /var/www/html/arrowsmith_uic/data/stopwords_pubmed
Ngram_max: 3
7647 Search ARROWSMITH A
A_query_raw: PLA2R1 OR HLA-DQA1 Sat Feb 19 03:06:46 2011

A query = PLA2R1 OR HLA-DQA1 started Sat Feb 19 03:06:46 2011
A query resulted in 1181 titles
7647 Search ARROWSMITH C
C_query_raw: idiopathic membranous nephropathy Sat Feb 19 03:07:04 2011

C: idiopathic membranous nephropathy 3869

A: pubmed_query_A 1181

AC: ( PLA2R1 OR HLA-DQA1 ) AND ( idiopathic membranous nephropathy ) 5

C query = idiopathic membranous nephropathy started Sat Feb 19 03:07:05 2011
C query resulted in 3869 titles
A AND C query resulted in 5 titles
1647 B-terms ready on Sat Feb 19 03:07:35 2011

Sem_filter:
Genes & Molecular Sequences, and Gene & Protein Names
181 B-terms left after filter executed Sat Feb 19 03:08:39 2011

B-list on Sat Feb 19 03:11:20 2011
1 single nucleotide polymorphism
2 dqb1
3 hla a
4 dr2
5 iga nephropathy
6 dqb1 allele
7 hla class gene
8 dqa1 allele
9 ctla-4
10 drb
11 dr3
12 tap1
13 histocompatibility complex class
14 hla b
15 heparan sulfate proteoglycan
16 gene japanese
17 anticardiolipin antibody
18 allele korean
19 celiac disease
20 major histocompatibility complex
21 hla dma
22 mhc
23 hla
24 fas ligand
25 phospholipase a2 receptor
26 c4a
27 iga
28 alpha gene
29 allele
30 diabetes mellitus
31 allele associated
32 allele patient
33 chemokine
34 cytokine production
35 phospholipase
36 cdna
37 han
38 extracellular matrix protein
39 interferon alpha
40 tumor necrosis factor
41 diabetes
42 topoisomerase i
43 thymoma
44 histocompatibility
45 tnf alpha
46 pss
47 topoisomerase
48 class i
49 thyroid peroxidase
50 dr
51 tnf
52 cytokine
53 arab
54 sle
55 insulin
56 subunit gene
57 sds
58 beta gene
59 proteoglycan
60 interferon
61 ifn gamma
62 ige
63 jun
64 a2
65 hiv
66 multiple sclerosis
67 twin
68 beta chain
69 pcr
70 ace