Referred from websites https://www.biostars.org/p/13535/ https://www.researchgate.net/post/Interpretation_of_low_Bootstrap_value In general, you should (1) get the protein sequences*, (1a) remove pseudogenes if you can, (2) align them (clustalX), (3) manually select conserved region(s), ...
换了系统, 之前安装的EMBOSS没法用了,只好重新安装。过程很简单,首先从ftp://emboss.open-bio.org/pub/EMBOSS/下载EMBOSS的压缩包,然后解压和编译,如下: gunzip EMBOSS-6.6.0.tar.gz tar xvf EMBOSS-6.6.0.tar 进入解压之后的目录,编译: ./configure make sudo make install 安装完成后测试一下: ...
好久没有玩过大量序列了,发现之前的脚本不管用了,所以从bing上又学习了一遍。下面是一位大神总结的几种最简单的方法。From https://edwards.sdsu.edu/research/ncbi-sequence-or-fasta-batch-download-using-entrez/ Three easy ways to download multiple sequences from NCBI There are different ways of how to d ...