已经发表的植物SNP数据(关联作图)
2011-12-1 21:50
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标签:植物, office, class
http://www.gramene.org/diversity/tassel_launch.html
LAUNCH TASSEL with SNP data setsClicking on a link below will launch TASSEL 3.0-beta with one or all chromosomes. Your computer must have Java 6 installed.
- Maize
- Maize Diversity Hapmap1, AGPv2 coordinates, 1.6 million SNP x 27 NAM lines.[ chr: unmapped 1 2 3 4 5 6 7 8 9 10 11 12 ]
- Arabidopsis
- NSF 2010 Project, Magnus Nordborg, http://walnut.usc.edu NSF Arabidopsis 2010 Project 250K chip, v3.06; 1307 ecotypes x 214,052 SNPs; TAIR10.[ chr: 1 2 3 4 5 ]
- Richard Mott; WTCHG(Wellcome Trust Centre for Human Genetics) 1001 Genomes WTCHG/Mott set from dbSNP; 17 ecotypes x 2698797 SNPs; TAIR10.[ chr: 1 2 3 4 5 ]
- Atwell S, et. al. Atwell et. al, Nature 2010, GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines; TAIR10.[ chr: 1 2 3 4 5 ALL ]
- D. Weigel NSF Arabidopsis 2010 Project SNP Discovery; 20 ecotypes, 637522 SNPs; Clark et. al. 2007; TAIR10.[ chr: 1 2 3 4 5 ]
- M. Nordborg NSF Arabidopsis 2010 Project 250K chip, v3.04; 1179 ecotypes x 214,545 SNPs; TAIR10.[ chr: 1 2 3 4 5 ]
- Rice
- Yulin Jia, USDA-ARS DBNRRC B-Gross/J-Yulin SNP Pi-ta study in AA Oryza; 143 accessions x 632 SNP.[ chr: 12 ]
- Rice HaplotypeMap Project, National Center for Gene Research, CAS; www.ncgr.ac.cn/RiceHapMap Huang X, et al, Nat Genetics 2010 Nov. 842,474 SNPs* x 374 landraces, 14 phenotypes. *IRGSP4 coordinates..[ chr: 1 2 3 4 5 6 7 8 9 10 11 12 ]
Genome-wide association studies of 14 agronomic traits in rice landraces
Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice
Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa(这篇文章里说,种子可以获得,但其提供的网站,打不开.不知是不是我这里暂时打不开)
本想把参考文献传上来,有点大比较费时间
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