cliffgao的个人博客分享 http://blog.sciencenet.cn/u/cliffgao 兴趣:生物信息学、统计、概率

博文

psipred installation

已有 5589 次阅读 2011-4-18 16:14 |个人分类:bioinformatics|系统分类:科研笔记

Installation of Psipred
Cliff Gao
(1)  download the code of psipred from
http://bioinfadmin.cs.ucl.ac.uk/downloads/
#  when I am writing this blog,  psipred is v3.2
(2)  tar -zxvf  *.tar.gz  file
         cd  psipred
       cd  src
       make
       make install

(3) open the runpsipred
      change the 
      dbname    # your database name; for my dbname is nr/filtnr
      ncbidir    # where you installed blast
(4)  ./runpsipred   example.fasta
# runpsipred is a script used the tcsh  if you has not tcsh
,  type  sudo apt-get install tcsh

That's all.






https://wap.sciencenet.cn/blog-468005-434617.html

上一篇:待解决的问题:停止运行时间太久的程序。
下一篇:running R script
收藏 IP: 202.113.29.*| 热度|

0

发表评论 评论 (0 个评论)

数据加载中...

Archiver|手机版|科学网 ( 京ICP备07017567号-12 )

GMT+8, 2024-4-19 02:58

Powered by ScienceNet.cn

Copyright © 2007- 中国科学报社

返回顶部