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苦荞麦基因组揭示其芦丁生物合成与非生物胁迫抗性

已有 5442 次阅读 2017-9-8 08:40 |个人分类:每日摘要|系统分类:科研笔记


The Tartary Buckwheat Genome Provides Insights into Rutin Biosynthesis and Abiotic Stress Tolerance


First author: Lijun Zhang; Affiliations: Shanxi Academy of Agricultural Sciences (山西省农业科学院): Taiyuan, China

Corresponding author: Jun Wang (王俊;华南农大), Lin Cui (崔林), Huimin Liu (刘惠民), Chengzhi Liang (梁承志;中科院遗传与发育生物研究所), Zhijun Qiao (乔治军)


Tartary buckwheat (Fagopyrum tataricum; 苦荞麦) is an important pseudocereal crop that is strongly adapted to growth in adverse environments. Its gluten-free (无麸质) grain contains complete proteins with a well-balanced (均衡的) composition of essential amino acids, and is a rich source of beneficial phytochemicals (植物化学物质) that provide significant health benefits. Here we report a high-quality, chromosome-scale Tartary buckwheat genome sequence of 489.3 Mb that is assembled by combining whole genome shotgun sequencing of both Illumina short reads and single-molecule real time long reads, sequence tags of a large DNA insert fosmid library, Hi-C sequencing data and BioNano genome maps. We annotated 33 366 high confidence protein-coding genes based on expression evidence. Comparisons of the intra-genome with the sugar beet (甜菜) genome revealed an independent whole genome duplication that occurred in the buckwheat lineage after they have diverged from the common ancestor, which was not shared with rosids or asterids. The reference genome facilitated the identification of many new genes predicted to be involved in rutin (芦丁) biosynthesis and regulation, aluminum (铝) stress resistance, and in drought and cold stress responses. Our data suggests that Tartary buckwheat's ability to tolerate high levels of abiotic stress is attributed to (归因于) the expansion of several gene families involved in signal transduction, gene regulation, and membrane transport. The availability of these genomic resources will facilitate the discovery of agronomically and nutritionally important genes and genetic improvement of Tartary buckwheat.


苦荞麦是一种重要的谷物类作物,其能够适应多种不同的生境。苦荞麦无麸质的谷粒含均衡组成的氨基酸的完整蛋白,且富含有益的植物化学物质,对于健康有着诸多好处。本文作者报道了一个高质量、染色体级别的苦荞麦基因组序列,基因组大小为489.3 Mb,该物种的组装结合了Illumina短reads和单分子实时长reads的全基因组鸟枪测序、大片段DNA序列标签插入的fosmid文库、Hi-C测序数据以及BioNano基因组光学图谱。作者注释了33 366个高质量的蛋白编码基因,且有表达数据的支持。通过与甜菜基因组的比较,作者鉴定了一个苦荞麦特异的基因组复制事件,该WGD发生在苦荞麦从与甜菜的共同祖先分化出来之后,是苦荞麦这一支特异的WGD事件,并不与菊类或蔷薇类植物共享。苦荞麦的参考基因组帮助鉴定了芦丁生物合成和调控、铝胁迫抗性、干旱及冷胁迫响应相关的新的基因。本文的分析结果表明苦荞麦能够忍受高水平的非生物胁迫主要归因于一些与信号转导、基因调控以及膜转运相关基因家族的扩张。苦荞麦基因组的发表将有利于挖掘农艺和营养性状的重要基因,助力于苦荞麦的遗传改良。


通讯乔治军 (http://www.sxcrop.com/Html/?368.html)


个人简介:1964年生,党员,山西河曲人, 2003.7年于山西农业大学作物遗传育种专业硕士毕业, 现为山西省农业科学院农作物品种资源研究所所长,研究员,硕士导师。


研究方向:作物种质资源。


doi: http://dx.doi.org/10.1016/j.molp.2017.08.013


Journal: Molecular Plant
Published online: August 31, 2017.


(P.S. 欢迎访问个人博客:https://plantfrontiers.wordpress.com

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