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利用MySQL库分析关于水稻基因的研究(六)

已有 3329 次阅读 2014-10-6 23:36 |个人分类:linux|系统分类:科研笔记

      哪些期刊发表过关于水稻基因的文章,数量有多少?今天用了一个我以前没有用过的SQL查询语句来回答这个问题。

     先建立一个空表,表名为:journal_refnumber_14922。这个表有两个字段:journal_name,期刊名字;ref_numbers,期刊中报道的文献数量。journal_name的定义方式和reflist_14922中的journal字段一样。然后用下面的SQL语句插入数据:

      INSERT INTO journal_refnumber_14922(journal_name,ref_numbers)

      SELECT journal, COUNT(DISTINCT Oryzabase_ref_id)

      FROM reflist_14922

      GROUP BY journal

      这个select用得比较多,至于INSERT INTO这个就不太熟了,所以用百度搜索了下。总共有500种期刊报道过水稻基因。其中报道文献数量在10以上的期刊如下:

journal_nameref_numbers 递增
Ann. Phytopath. Soc. Japan10
BMC Evol. Biol.10
Bot. Bull. Acad. Sin.10
Development10
Eur. J. Biochem.10
J. Hered.10
Journal of Plant Biology10
Plant Biotechnol J.10
FEBS J.11
Nat. Genet.11
Plant Science11
PLoS Genet.11
Rice Genetics. IRRI, Manila, Philippines.11
S. Iyama and G. Takeda (eds.), Proc. 6th Internat....11
BMC Plant Biol12
EMBO J.12
J. Fac. Agr. Hokkaido Univ.12
RICE12
Physiol Plant13
DNA Res.14
Nat Genet14
J Integr Plant Biol15
BMC Genomics16
Mem. Fac. Agr. Hokkaido Univ.16
Mol. Biol. Evol.16
Plant Breeding17
Rice Genetics. II. IRRI, Manila, Philippines.17
BMC Plant Biol.18
Mol. Biol. Rep.18
Science18
DNA Seq.20
Genome20
Phytochemistry21
Plant Physiol. Biochem.22
Crop Sci.23
Mol. Cells23
Plant Signal Behav23
Nature24
Phytopathology24
Genes Genet. Syst.26
Mol Plant28
Planta28
Jpn. J. Genet.29
Mol. Genet. Genomics29
Molecular Breeding29
Plant Cell Environ.29
Rice Genetics III. IRRI, Manila, Philippines.30
Mol. Plant Microbe Interact.31
New Phytol.31
Biochim. Biophys. Acta34
Genetics35
FEBS Lett.37
Biochem. Biophys. Res. Commun.38
Nucleic Acids Res.38
J. Plant Physiol.39
Mol. Gen. Genet.39
Biosci. Biotechnol. Biochem.42
Molecular Genetics & Genomics (Molecular General G...45
Plant Cell Rep.46
Planta.46
J. Biol. Chem.47
PLoS ONE59
Euphytica64
Plant Sci.68
J. Exp. Bot.69
Gene89
Proc. Natl. Acad. Sci. U.S.A.132
Japan. J. Breed.163
Plant Cell Physiol.185
Plant Cell204
Plant J.212
Breeding Science258
Plant Mol. Biol.266
Theor. Appl. Genet.287
Plant Physiol.348
RGN                         394

这个表里有不少非常有名的期刊。利用这个表可以很方便的在文献数据库中把发表在特定期刊上的文章抓出来。比如Nature Genetics

SELECT DISTINCT Journal, Title, Volume, pages, YEAR
FROM `reflist_14922` 
WHERE Journal = "Nat Genet"
OR journal = "Nat. Genet."
ORDER BY YEAR

结果:

JournalTitleVolumepagesYEAR
Nat GenetA 300 kilobase interval genetic map of rice including 883 expressed sequences.8365-372.1994
Nat GenetSequencing of a rice centromere uncovers active genes.36(2)138-1452004
Nat GenetA rice quantitative trait locus for salt tolerance encodes a sodium transporter.37(10)1141-11462005
Nat GenetA QTL for rice grain width and weight encodes a novel RING-type E3 ubiquitin ligase39(5)623-6302007
Nat GenetControl of a key transition from prostrate to erect growth in rice domestication40(11)1360-13642008
Nat GenetControl of rice grain-filling and yield by a gene with a potential signature of domestication40(11)1370-13742008
Nat GenetDeletion in a gene associated with grain size increased yields during rice domestication40(8)1023-10282008
Nat GenetGenetic control of rice plant architecture domestication40(11)1365-692008
Nat GenetGenetic control of rice plant architecture under domestication40(11)1365-13692008
Nat GenetNatural variation in Ghd7 is an important regulator of heading date and yield potential in rice40(6)761-7672008
Nat GenetNatural variation at the DEP1 locus enhances grain yield in rice41(4)494-4972009
Nat GenetA pair of floral regulators sets critical day length for Hd3a florigen expression in rice.42(7)635-82010
Nat GenetOsSPL14 promotes panicle branching and higher grain productivity in rice42(6)545-92010
Nat GenetRegulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice42(6)541-5442010
Nat. Genet.Natural variation in GS5 plays an important role in regulating grain size and yield in rice43(12)1266-12692011
Nat. Genet.Control of grain size, shape and quality by OsSPL16 in rice.44(8)950-42012
Nat. Genet.Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm.44(1)32-92012
Nat. Genet.One gene's shattering effects.44(6)616-72012
Nat. Genet.Parallel domestication of the Shattering1 genes in cereals.44(6)720-42012
Nat. Genet.A battle between genomes in plant male fertility.45(5)472-32013
Nat. Genet.A detrimental mitochondrial-nuclear interaction causes cytoplasmic male sterility in rice.45(5)573-72013
Nat. Genet.Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions.45(9)1097-1022013
Nat. Genet.Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield.45(6)707-112013
Nat. Genet.OsLG1 regulates a closed panicle trait in domesticated rice.45(4)462-5, 465e1-22013
Nat. Genet.Chalk5 encodes a vacuolar H(+)-translocating pyrophosphatase influencing grain chalkiness in rice.46(4)398-4042014








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