|||
答案:
conda install -c bioconda racon
Racon是一个基于minimap和miniasm的,构建一致性序列(consensus)的一款软件,速度快是其特点。
一般这样就可以了。
# Install minimap and miniasm (requiring gcc and zlib)
git clone https://github.com/lh3/minimap && (cd minimap && make)
git clone https://github.com/lh3/minimap2 && (cd minimap2 && make)
git clone https://github.com/lh3/miniasm && (cd miniasm && make)
# Install Racon (requiring gcc 4.8+ or clang 3.4+, and cmake 3.2+)
git clone --recursive https://github.com/isovic/racon.git racon
cd racon
mkdir build
cd build
cmake -DCMAKE_BUILD_TYPE=Release ..
make
不知道从什么时候其Github也开始不能稳定访问了,折腾了一圈,得到类似的错误。
/tmp/ccXiHDpV.s:5338: Error: no such instruction: `vpbroadcastd %xmm0,%ymm0'
/tmp/ccXiHDpV.s:5486: Error: no such instruction: `vpbroadcastd %xmm0,%ymm0'
/tmp/ccXiHDpV.s:6477: Error: no such instruction: `shlx %r9,%r15,%rax'
/tmp/ccXiHDpV.s:6489: Error: no such instruction: `shlx %r10,%r15,%r14'
/tmp/ccXiHDpV.s:6582: Error: no such instruction: `vpbroadcastq %xmm1,%ymm0'
/tmp/ccXiHDpV.s:6616: Error: no such instruction: `shlx %rbx,%rsi,%rdx'
/tmp/ccXiHDpV.s:6634: Error: no such instruction: `shlx %rdx,%r8,%rcx'
搜索提示是intel的新指令。
最后,得到了
conda install -c bioconda racon
这个解决方案。
感谢conda,感谢google,预祝conda持续成长。
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